Detailed information of SNP:
|
SNP ID:
sf1003605129(Gbrowse)
Chromosome: chr10 Position: 3605129 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 77.21% | 22.79% |
| All Indica | 786 | 65.01% | 34.99% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 64.23% | 35.77% |
| Indica II | 211 | 67.77% | 32.23% |
| Indica Intermediate | 206 | 63.59% | 36.41% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003605129 | C->T | INTERGENIC | None |