Detailed information of SNP:
|
SNP ID:
sf1003606240(Gbrowse)
Chromosome: chr10 Position: 3606240 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 72.10% | 27.90% |
| All Indica | 793 | 74.15% | 25.85% |
| All Japonica | 496 | 78.02% | 21.98% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 70.97% | 29.03% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003606240 | C->T | INTERGENIC | None |