Detailed information of SNP:
|
SNP ID:
sf1003624149(Gbrowse)
Chromosome: chr10 Position: 3624149 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 69.48% | 30.52% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 492 | 26.22% | 73.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 333 | 4.80% | 95.20% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003624149 | T->C | INTERGENIC | None |