Detailed information of SNP:
|
SNP ID:
sf1003624716(Gbrowse)
Chromosome: chr10 Position: 3624716 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 66.29% | 33.71% |
| All Indica | 792 | 90.40% | 9.60% |
| All Japonica | 493 | 23.73% | 76.27% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003624716 | T->C | INTERGENIC | None |