Detailed information of SNP:
|
SNP ID:
sf1003625804(Gbrowse)
Chromosome: chr10 Position: 3625804 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 54.70% | 45.30% |
| All Indica | 796 | 43.59% | 56.41% |
| All Japonica | 496 | 77.42% | 22.58% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 37.53% | 62.47% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 210 | 52.86% | 47.14% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003625804 | T->G | INTERGENIC | None |