Detailed information of SNP:
|
SNP ID:
sf1003635349(Gbrowse)
Chromosome: chr10 Position: 3635349 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 94.65% | 5.35% |
| All Indica | 766 | 92.17% | 7.83% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 364 | 91.21% | 8.79% |
| Indica II | 199 | 93.47% | 6.53% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003635349 | A->G | LOC_Os10g06980(LOC_Os10g06980.1) | Non-Synonymous SNP |