Detailed information of SNP:
|
SNP ID:
sf1003687364(Gbrowse)
Chromosome: chr10 Position: 3687364 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 87.40% | 12.60% |
| All Indica | 796 | 83.42% | 16.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 37.50% | 62.50% |
| Indica I | 373 | 71.05% | 28.95% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003687364 | T->A | INTERGENIC | None |