Detailed information of SNP:
|
SNP ID:
sf1003716289(Gbrowse)
Chromosome: chr10 Position: 3716289 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 85.16% | 14.84% |
| All Indica | 795 | 80.38% | 19.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003716289 | A->G | INTERGENIC | None |