Detailed information of SNP:



SNP ID: sf1003719406(Gbrowse)

Chromosome: chr10

Position: 3719406
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1415 93.64% 6.36%
All Indica795 99.75% 0.25%
All Japonica497 85.71% 14.29%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II209 99.04% 0.96%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 92.24% 7.76%
Tropical Japonica94 76.60% 23.40%
Japonica Intermediate68 66.18% 33.82%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1003719406 A->T INTERGENIC None