Detailed information of SNP:
SNP ID:
sf1003719406(Gbrowse)
Chromosome: chr10 Position: 3719406 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1415 | 93.64% | 6.36% |
All Indica | 795 | 99.75% | 0.25% |
All Japonica | 497 | 85.71% | 14.29% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 209 | 99.04% | 0.96% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 92.24% | 7.76% |
Tropical Japonica | 94 | 76.60% | 23.40% |
Japonica Intermediate | 68 | 66.18% | 33.82% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1003719406 | A->T | INTERGENIC | None |