Detailed information of SNP:
|
SNP ID:
sf1003724567(Gbrowse)
Chromosome: chr10 Position: 3724567 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 51.80% | 48.20% |
| All Indica | 771 | 30.74% | 69.26% |
| All Japonica | 496 | 87.50% | 12.50% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 361 | 20.78% | 79.22% |
| Indica II | 210 | 51.43% | 48.57% |
| Indica Intermediate | 200 | 27.00% | 73.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003724567 | G->A | INTERGENIC | None |