Detailed information of SNP:
|
SNP ID:
sf1003724939(Gbrowse)
Chromosome: chr10 Position: 3724939 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 53.69% | 46.31% |
| All Indica | 762 | 77.43% | 22.57% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 359 | 84.68% | 15.32% |
| Indica II | 205 | 60.98% | 39.02% |
| Indica Intermediate | 198 | 81.31% | 18.69% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003724939 | T->C | INTERGENIC | None |