Detailed information of SNP:
|
SNP ID:
sf1003733978(Gbrowse)
Chromosome: chr10 Position: 3733978 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 63.73% | 36.27% |
| All Indica | 778 | 87.15% | 12.85% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 361 | 87.53% | 12.47% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 205 | 84.39% | 15.61% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003733978 | C->T | INTERGENIC | None |