Detailed information of SNP:
|
SNP ID:
sf1003734101(Gbrowse)
Chromosome: chr10 Position: 3734101 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 64.98% | 35.02% |
| All Indica | 782 | 89.00% | 11.00% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 364 | 90.38% | 9.62% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003734101 | C->T | INTERGENIC | None |