Detailed information of SNP:
|
SNP ID:
sf1003748573(Gbrowse)
Chromosome: chr10 Position: 3748573 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 96.18% | 3.82% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 494 | 92.91% | 7.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003748573 | A->G | INTERGENIC | None |