Detailed information of SNP:
|
SNP ID:
sf1003768144(Gbrowse)
Chromosome: chr10 Position: 3768144 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 67.97% | 32.03% |
| All Indica | 788 | 89.09% | 10.91% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 89.65% | 10.35% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003768144 | A->G | INTERGENIC | None |