Detailed information of SNP:
SNP ID:
sf1003776375(Gbrowse)
Chromosome: chr10 Position: 3776375 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1413 | 97.10% | 2.90% |
All Indica | 793 | 95.21% | 4.79% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 370 | 94.86% | 5.14% |
Indica II | 212 | 96.23% | 3.77% |
Indica Intermediate | 211 | 94.79% | 5.21% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1003776375 | C->A | LOC_Os10g07190(LOC_Os10g07190.1) | Synonymous |