Detailed information of SNP:
|
SNP ID:
sf1003778158(Gbrowse)
Chromosome: chr10 Position: 3778158 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.71% | 3.29% |
| All Indica | 780 | 94.10% | 5.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003778158 | G->T | INTERGENIC | None |