Detailed information of SNP:
|
SNP ID:
sf1003805384(Gbrowse)
Chromosome: chr10 Position: 3805384 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 97.66% | 2.34% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 365 | 91.78% | 8.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 213 | 85.92% | 14.08% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003805384 | G->A | INTERGENIC | None |