Detailed information of SNP:
|
SNP ID:
sf1003813374(Gbrowse)
Chromosome: chr10 Position: 3813374 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 52.37% | 47.63% |
| All Indica | 795 | 38.49% | 61.51% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 32.44% | 67.56% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003813374 | C->A | LOC_Os10g07248(LOC_Os10g07248.1) | INTRON |