Detailed information of SNP:
|
SNP ID:
sf1003829371(Gbrowse)
Chromosome: chr10 Position: 3829371 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.42% | 25.58% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003829371 | G->C | INTERGENIC | None |