Detailed information of SNP:
|
SNP ID:
sf1003841402(Gbrowse)
Chromosome: chr10 Position: 3841402 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.03% | 29.97% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003841402 | A->G | INTERGENIC | None |