Detailed information of SNP:



SNP ID: sf1003841402(Gbrowse)

Chromosome: chr10

Position: 3841402
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 70.03% 29.97%
All Indica798 95.74% 4.26%
All Japonica497 24.14% 75.86%
Aus67 95.52% 4.48%
Indica I374 95.99% 4.01%
Indica II213 97.18% 2.82%
Indica Intermediate211 93.84% 6.16%
Temperate Japonica335 3.88% 96.12%
Tropical Japonica94 89.36% 10.64%
Japonica Intermediate68 33.82% 66.18%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1003841402 A->G INTERGENIC None