Detailed information of SNP:
|
SNP ID:
sf1003860032(Gbrowse)
Chromosome: chr10 Position: 3860032 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 95.22% | 4.78% |
| All Indica | 795 | 99.75% | 0.25% |
| All Japonica | 442 | 86.20% | 13.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 283 | 80.21% | 19.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003860032 | C->T | LOC_Os10g07310(LOC_Os10g07310.1) | Non-Synonymous SNP |