Detailed information of SNP:
|
SNP ID:
sf1003863498(Gbrowse)
Chromosome: chr10 Position: 3863498 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 80.34% | 19.66% |
| All Indica | 797 | 65.62% | 34.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 69.07% | 30.93% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003863498 | G->T | INTERGENIC | None |