Detailed information of SNP:
|
SNP ID:
sf1003872145(Gbrowse)
Chromosome: chr10 Position: 3872145 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.28% | 22.72% |
| All Indica | 797 | 76.66% | 23.34% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003872145 | C->A | INTERGENIC | None |