Detailed information of SNP:
|
SNP ID:
sf1003943374(Gbrowse)
Chromosome: chr10 Position: 3943374 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 53.43% | 46.57% |
| All Indica | 795 | 36.98% | 63.02% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 32.09% | 67.91% |
| Indica II | 212 | 36.79% | 63.21% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003943374 | G->A | INTERGENIC | None |