Detailed information of SNP:
|
SNP ID:
sf1003955734(Gbrowse)
Chromosome: chr10 Position: 3955734 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.85% | 27.15% |
| All Indica | 798 | 65.04% | 34.96% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 69.25% | 30.75% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003955734 | G->A | LOC_Os10g07460(LOC_Os10g07460.1) | INTRON |