Detailed information of SNP:
|
SNP ID:
sf1003995397(Gbrowse)
Chromosome: chr10 Position: 3995397 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.58% | 25.42% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 494 | 32.39% | 67.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 19.82% | 80.18% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003995397 | A->C | INTERGENIC | None |