Detailed information of SNP:
|
SNP ID:
sf1004019280(Gbrowse)
Chromosome: chr10 Position: 4019280 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.21% | 13.79% |
| All Indica | 795 | 97.61% | 2.39% |
| All Japonica | 497 | 65.79% | 34.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004019280 | T->A | INTERGENIC | None |