Detailed information of SNP:
|
SNP ID:
sf1004030394(Gbrowse)
Chromosome: chr10 Position: 4030394 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 93.52% | 6.48% |
| All Indica | 792 | 93.81% | 6.19% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004030394 | T->C | INTERGENIC | None |