Detailed information of SNP:
|
SNP ID:
sf1004031925(Gbrowse)
Chromosome: chr10 Position: 4031925 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 95.05% | 4.95% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 495 | 92.32% | 7.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004031925 | G->A | INTERGENIC | None |