Detailed information of SNP:
|
SNP ID:
sf1004058477(Gbrowse)
Chromosome: chr10 Position: 4058477 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 70.81% | 29.19% |
| All Indica | 795 | 63.40% | 36.60% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 371 | 66.04% | 33.96% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004058477 | G->A | INTERGENIC | None |