Detailed information of SNP:
|
SNP ID:
sf1004076032(Gbrowse)
Chromosome: chr10 Position: 4076032 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.01% | 40.99% |
| All Indica | 796 | 38.44% | 61.56% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 36.46% | 63.54% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004076032 | T->C | LOC_Os10g07556(LOC_Os10g07556.1) | INTRON |