Detailed information of SNP:
|
SNP ID:
sf1004105309(Gbrowse)
Chromosome: chr10 Position: 4105309 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 53.33% | 46.67% |
| All Indica | 786 | 77.35% | 22.65% |
| All Japonica | 496 | 16.53% | 83.47% |
| Aus | 62 | 56.45% | 43.55% |
| Indica I | 369 | 82.11% | 17.89% |
| Indica II | 210 | 67.62% | 32.38% |
| Indica Intermediate | 207 | 78.74% | 21.26% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004105309 | C->T | INTERGENIC | None |