Detailed information of SNP:
|
SNP ID:
sf1004109164(Gbrowse)
Chromosome: chr10 Position: 4109164 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 70.16% | 29.84% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 37.02% | 62.98% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004109164 | C->T | LOC_Os10g07572(LOC_Os10g07572.1) | Non-Synonymous SNP |