Detailed information of SNP:
|
SNP ID:
sf1004127464(Gbrowse)
Chromosome: chr10 Position: 4127464 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 76.18% | 23.82% |
| All Indica | 785 | 94.01% | 5.99% |
| All Japonica | 490 | 45.71% | 54.29% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 368 | 98.37% | 1.63% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 330 | 36.36% | 63.64% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004127464 | A->G | INTERGENIC | None |