Detailed information of SNP:
|
SNP ID:
sf1004142537(Gbrowse)
Chromosome: chr10 Position: 4142537 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 53.08% | 46.92% |
| All Indica | 782 | 33.25% | 66.75% |
| All Japonica | 494 | 80.77% | 19.23% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 367 | 33.24% | 66.76% |
| Indica II | 209 | 45.45% | 54.55% |
| Indica Intermediate | 206 | 20.87% | 79.13% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004142537 | T->C | LOC_Os10g07578(LOC_Os10g07578.1) | Non-Synonymous SNP |