Detailed information of SNP:
|
SNP ID:
sf1004146516(Gbrowse)
Chromosome: chr10 Position: 4146516 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 64.84% | 35.16% |
| All Indica | 791 | 92.16% | 7.84% |
| All Japonica | 494 | 19.23% | 80.77% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 371 | 94.34% | 5.66% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004146516 | A->G | LOC_Os10g07578(LOC_Os10g07578.1) | Non-Synonymous SNP |