Detailed information of SNP:
|
SNP ID:
sf1004261109(Gbrowse)
Chromosome: chr10 Position: 4261109 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.21% | 43.79% |
| All Indica | 798 | 32.58% | 67.42% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 37.07% | 62.93% |
| Indica II | 212 | 34.91% | 65.09% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004261109 | C->A | LOC_Os10g07966(LOC_Os10g07966.1) | INTRON |