Detailed information of SNP:
|
SNP ID:
sf1004268584(Gbrowse)
Chromosome: chr10 Position: 4268584 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 75.26% | 24.74% |
| All Indica | 775 | 72.39% | 27.61% |
| All Japonica | 471 | 92.14% | 7.86% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 64.78% | 35.22% |
| Indica II | 195 | 77.95% | 22.05% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 326 | 99.69% | 0.31% |
| Tropical Japonica | 86 | 66.28% | 33.72% |
| Japonica Intermediate | 59 | 88.14% | 11.86% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004268584 | C->A | LOC_Os10g07970(LOC_Os10g07970.1) | Non-Synonymous SNP |