Detailed information of SNP:
|
SNP ID:
sf1004272644(Gbrowse)
Chromosome: chr10 Position: 4272644 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.89% | 43.11% |
| All Indica | 797 | 30.74% | 69.26% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 37.70% | 62.30% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 210 | 24.29% | 75.71% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004272644 | C->T | INTERGENIC | None |