Detailed information of SNP:
|
SNP ID:
sf1004279024(Gbrowse)
Chromosome: chr10 Position: 4279024 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.82% | 29.18% |
| All Indica | 799 | 71.71% | 28.29% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004279024 | T->A | INTERGENIC | None |