Detailed information of SNP:
|
SNP ID:
sf1004279110(Gbrowse)
Chromosome: chr10 Position: 4279110 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 75.83% | 24.17% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 34.41% | 65.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004279110 | C->G | LOC_Os10g07978(LOC_Os10g07978.2) | UTR_5_PRIME |
| sf1004279110 | C->G | LOC_Os10g07978(LOC_Os10g07978.1) | UTR_5_PRIME |