Detailed information of SNP:
|
SNP ID:
sf1004309291(Gbrowse)
Chromosome: chr10 Position: 4309291 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.72% | 40.28% |
| All Indica | 797 | 49.94% | 50.06% |
| All Japonica | 496 | 72.18% | 27.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 209 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004309291 | G->A | LOC_Os10g07998(LOC_Os10g07998.1) | INTRON |