Detailed information of SNP:
|
SNP ID:
sf1004365528(Gbrowse)
Chromosome: chr10 Position: 4365528 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.18% | 44.82% |
| All Indica | 799 | 69.59% | 30.41% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 28.96% | 71.04% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004365528 | T->C | INTERGENIC | None |