Detailed information of SNP:
|
SNP ID:
sf1004369236(Gbrowse)
Chromosome: chr10 Position: 4369236 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1288 | 53.11% | 46.89% |
| All Indica | 706 | 39.24% | 60.76% |
| All Japonica | 468 | 82.05% | 17.95% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 331 | 36.86% | 63.14% |
| Indica II | 194 | 41.75% | 58.25% |
| Indica Intermediate | 181 | 40.88% | 59.12% |
| Temperate Japonica | 323 | 90.40% | 9.60% |
| Tropical Japonica | 80 | 47.50% | 52.50% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 36 | 52.78% | 47.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004369236 | C->T | LOC_Os10g08030(LOC_Os10g08030.1) | Non-Synonymous SNP |