Detailed information of SNP:
|
SNP ID:
sf1004374627(Gbrowse)
Chromosome: chr10 Position: 4374627 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 96.56% | 3.44% |
| All Indica | 778 | 95.12% | 4.88% |
| All Japonica | 494 | 98.18% | 1.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 96.19% | 3.81% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004374627 | G->A | LOC_Os10g08040(LOC_Os10g08040.1) | INTRON |