Detailed information of SNP:
SNP ID:
sf1004377848(Gbrowse)
Chromosome: chr10 Position: 4377848 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1389 | 96.33% | 3.67% |
All Indica | 776 | 98.84% | 1.16% |
All Japonica | 491 | 91.65% | 8.35% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 365 | 98.63% | 1.37% |
Indica II | 206 | 99.03% | 0.97% |
Indica Intermediate | 205 | 99.02% | 0.98% |
Temperate Japonica | 332 | 89.16% | 10.84% |
Tropical Japonica | 91 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 92.65% | 7.35% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1004377848 | T->C | INTERGENIC | None |