Detailed information of SNP:
|
SNP ID:
sf1004377848(Gbrowse)
Chromosome: chr10 Position: 4377848 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 96.33% | 3.67% |
| All Indica | 776 | 98.84% | 1.16% |
| All Japonica | 491 | 91.65% | 8.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 98.63% | 1.37% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 205 | 99.02% | 0.98% |
| Temperate Japonica | 332 | 89.16% | 10.84% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004377848 | T->C | INTERGENIC | None |