Detailed information of SNP:
|
SNP ID:
sf1004382435(Gbrowse)
Chromosome: chr10 Position: 4382435 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 69.00% | 31.00% |
| All Indica | 742 | 61.99% | 38.01% |
| All Japonica | 481 | 89.81% | 10.19% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 349 | 49.86% | 50.14% |
| Indica II | 196 | 71.43% | 28.57% |
| Indica Intermediate | 197 | 74.11% | 25.89% |
| Temperate Japonica | 332 | 91.87% | 8.13% |
| Tropical Japonica | 85 | 82.35% | 17.65% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004382435 | G->A | INTERGENIC | None |