Detailed information of SNP:
|
SNP ID:
sf1004388574(Gbrowse)
Chromosome: chr10 Position: 4388574 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 72.46% | 27.54% |
| All Indica | 779 | 66.75% | 33.25% |
| All Japonica | 486 | 93.42% | 6.58% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 361 | 55.40% | 44.60% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 208 | 74.04% | 25.96% |
| Temperate Japonica | 327 | 96.33% | 3.67% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004388574 | G->A | LOC_Os10g08070(LOC_Os10g08070.1) | Non-Synonymous SNP |