Detailed information of SNP:
|
SNP ID:
sf1004389212(Gbrowse)
Chromosome: chr10 Position: 4389212 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 71.04% | 28.96% |
| All Indica | 778 | 65.81% | 34.19% |
| All Japonica | 492 | 90.45% | 9.55% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 365 | 54.79% | 45.21% |
| Indica II | 211 | 74.88% | 25.12% |
| Indica Intermediate | 202 | 76.24% | 23.76% |
| Temperate Japonica | 332 | 94.28% | 5.72% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004389212 | A->G | INTERGENIC | None |